A step-by-step guide to building a prism-type TIRF microscope

Total Internal Reflection Florescence (TIRF) Microscopy is a technique used to observe a very thin region of sample directly at the surface of an interface (coverslip) without obtaining background interference from the rest of the sample volume.

Dalton Gibbs, Anisa Kaur, Anoja Megalathan, Kumar Sapkota, and Soma Dhakal have published a wonderful paper entitled “Build Your Own Microscope: Step-By-Step Guide for Building a Prism-Based TIRF Microscope“.

As the title implies, it is a step-by-step guide to build a prism-based TIRF microscope. It includes a bill of materials, step-by-step instructions, software links, beautiful diagrams and a level of technical detail that goes far beyond just how to build the device. We love to see this kind of thing.

The bill of materials doesn’t have any prices, so we thought we’d put together as many specific prices as we could here, which come to a total of around $30,000. This includes everything and we do mean everything, from the table to the optical glasses. You can save money in a lot of ways by swapping out parts like the shutters.

Catalog #DescriptionQuantityVendorCost
p/n 325–1206p/n 325–1206 UV FS Pellin-Broca Prism 11 × 20 × 6.4 mm2Altos Photonics, Inc. (Bozeman, MT, USA )$242
zet640/20xmagnetron bandpass clean-up filter (excitation path), 0–5 deg aoi1Chroma Technology Corp (Bellows Falls, VT, USA)$325
t565spxxr-uf3magnetron shortpass dichroic, 45 deg aoi1Chroma Technology Corp$475
1069417SYS: CUBE 640-40 CIRCULAR: 640 nm: 40 mW1Coherent Inc. (Santa Clara, CA, USA)$450
1073840ASSY: HEAT SINK: ACCESSORY: CUBE1Coherent Inc.$400
1214333Productivity Plus Bronze-CUBE3Coherent Inc.
EW-06419-01Tygon Microbore Autoanalysis Tubing, 0.020” × 0.060”OD, 100 ft/roll4Cole-Parmer$228
CL532-050-L532 nm Central Wavelength 50 mW CW Power1CyrstaLaser (Reno, NV, USA)
4001Hardman DOUBLE/BUBBLE Extra-Fast Set Epoxy Red Package 3.5 g Packet3Ellsworth Adhesive Systems (Germantown, WI, USA)$300
KBH-5503Laser Protective Eyewear for HeNe Alignment and KTP Alignment applications2Kentek Corporation (Pittsfield, NH, USA)$400
947015 ft USB 3.0 A Male to A Female Active Extension Cable2Monoprice (Rancho Cucamonga, CA, USA)$33
5010Cat6 24AWG UTP Ethernet Network Patch Cable, 20 ft Gray2Monoprice$9
2067USB to RS232 DB9 male(Serial)/DB25 male Converter Cable1Monoprice$10
U-R380IX3-D6RES;6-POSITION IX NOSEPIECE CODED, DIC1Olympus America Inc. (Center Valley, PA, USA)
U-V111CU-TV1XC;C-MOUNT CAMERA ADAPTER, CENTERABLE1Olympus America Inc.
9-U73445FR; 45MM FROSTED DIFFUSION FILTER, IX31Olympus America Inc.
UYCP-11UYCP-11;US STYLE 3-PRONG POWER CORD1Olympus America Inc.
5-UR403IX3-RFA;STRAIGHT ILLUMINATOR1Olympus America Inc.
5-UR416-1IX3-RFACS-1-2; CODED IX3FLUORESCENCE TURRET1Olympus America Inc.
OCT-TD7BX3TRF59907-OL3; Dual-band ET-532/640 nm laser TIRF set1Olympus America Inc.
OAT-DU-897U-CS0-#BVDU-897U-CS0-#BV; IXON ULTRA897 EMCCD, 56FPS, 512 × 512, 16 UM, USB1Olympus America Inc.
OAT-TR-EMFS-F06532/640 EM SPLITTING 3 PART FILTER SET FOR DPC&OPTOSPLIT1Olympus America Inc.
OAT-TR-DCIS-CA1-00DUAL CAM CASSETTE. REQ(TR-EMF S-F)1Olympus America Inc.
O89-OptoIILSOptoSplit II LS–1.0x; Optosplit II system w/cubes and diaphragm1Olympus America Inc.
OMT-010MT-010; LOGO CLOTH DUSTCOVER 11 × 25 × 26”, ANTI-STATIC BX, IX1Olympus America Inc.$35
M-ST-UT2-46-8; Tuned-Damped Table, 1200 × 1800 × 203 mm, M6 Holes1$10,000
OVP-S2000A428S-2000A-428; 28” Isolators w/Auto Leveling, Set of 41Olympus America Inc.
OVP-ACWSACWS; Air Compressor, Low Noise, 110 V1Olympus America Inc.$704
Computer & Monitor$800
DIB-551.00Diamond Coated “Stick” Drills, DIB-551.0010Shor International$90
TR6-P5Ø1/2” Optical Post, SS, 8-32 Setscrew, 1/4”−20 Tap, L = 6”, 5 Pack3Thorlabs, Inc. (Newton, NJ USA)$33
MB1218Aluminum Breadboard 12” × 18” × 1/2”, 1/4”−20 Taps1Thorlabs, Inc.$194
SH8S0508-32 Stainless Steel Cap Screw, 1/2” Long1Thorlabs, Inc.$7
TR12Ø1/2” Optical Post, SS, 8-32 Setscrew, 1/4”−20 Tap, L = 12”6Thorlabs, Inc.$68
SH25S0381/4”-20 Stainless Steel Cap Screw, 3/8” Long1Thorlabs, Inc.$8
RA90Right-Angle Clamp for Ø1/2” Posts, 3/16” Hex8Thorlabs, Inc.$80
TR6Ø1/2” Optical Post, SS, 8-32 Setscrew, 1/4”−20 Tap, L = 6”1Thorlabs, Inc.$7
TR075Ø1/2” Optical Post, SS, 8-32 Setscrew, 1/4”−20 Tap, L = 0.75”2Thorlabs, Inc.$10
SS25S0751/4”−20 Stainless Steel Setscrew, 3/4” Long, Pack of 251Thorlabs, Inc.$7
SH25S0751/4”−20 Stainless Steel Cap Screw, 3/4” Long, Pack of 251Thorlabs, Inc.$9
B3648F36” × 48” × 2.4” Imperial Breadboard, 128 × 98 × 23 cm1Thorlabs, Inc.$1,876
PSY313900 × 1200 mm Full Under Shelf, 146 × 95 × 6 cm1Thorlabs, Inc.$259
PTA512Air Compressor-110/115 V-60 Hz, US Power Plug, 45 × 38 × 46 cm1Thorlabs, Inc.$662
RSP1Rotation Stage For 1” Optics 2.2”OD 1.062-20 ID1Thorlabs, Inc.$91
TR3-P51/2” Dia. × 3” Length: Pack of 5 Post3Thorlabs, Inc.$75
SS6MS25M6-1.0 × 25 mm Set Screw, 25 Pack2Thorlabs, Inc.$17
SS6MS12M6 × 1.0 Stainless Steel Set Screw 12 mm Long Pack of (25)1Thorlabs, Inc.$6
FMP1-P5Fixed Ø1” Optical Mount 5-Pack2Thorlabs, Inc.$158
WP25M-VISMounted Ø25.0 mm Wire Grid Polarizer, 420–700 nM1Thorlabs, Inc.$291
ID8Mounted Standard Iris, 8.0.mm max. Aper.1Thorlabs, Inc.$51
ID12Iris Diaphragm 1/2”1Thorlabs, Inc.$51
ID15Mounted Standard Iris, 15.0.mm max. Aper.1Thorlabs, Inc.$51
WPMH05M-532Mounted Multi Order 1/2 Waveplate 532 nm1Thorlabs, Inc.$260
BB1-E02Ø25.4 mm Mirror, Broadband 400–750 nm4Thorlabs, Inc.$310
LB1904-A-MLMounted N-BK7 Bi-Convex Lens, Ø1”, f = 125 mm, -A1Thorlabs, Inc.$49
LB1437-A-MLMounted N-BK7 Bi-Convex Lens, Ø1”, f = 150 mm, -A1Thorlabs, Inc.$48
LB1945-A-MLMounted N-BK7 Bi-Convex Lens, Ø1”, f = 200 mm, -A1Thorlabs, Inc.$48
ESK01MOUNTING SUPPORTS ESSENTIALS KIT #11Thorlabs, Inc.$818
LG1Laser Glasses, 190–400 nm, 808–1090 nm1Thorlabs, Inc.$189
ADB-10Pellin Broca Prism 10 mm BK71Thorlabs, Inc.$75
MT3A/MXYZ Metric Translator Stage1Thorlabs, Inc.$1,240
KS1Lockable Kinematic 1” Optic Mount4Thorlabs, Inc.$93
SDA90120SStanding Height Active Science Desk to suit 900 × 1200 mm1Thorlabs, Inc.$2,822
LS6S2T0Uni-stabled housed Shutter1Vincent Associates$795
VCM-D1Shutter Driver1Vincent Associates$1,210